TAMU_GH_TBb029I20f117, TAMU_GH_TBb029I20f117 (genetic_marker) Gossypium longicalyx

Marker Overview
NameTAMU_GH_TBb029I20f117
dbSNP IDN/A
TypeSNP
SNP AllelesT/C
SpeciesGossypium longicalyx
PCR ConditionTm: optimum, 57 ; minimum, 55 ; maximum, 60 ; max difference, 2 ; product size: minimum, 50 bp; optimum, 50 bp; maximum, 100 bp
Max Length50
Publication[view all]
ContactStelly, David M.
CommentKASP assay uses a 3 primer system. Two that are allele specific, one for each SNP base and then 1 common that should not contain any SNP bases.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:12529456..12529556 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A13chromosomeA13:18492306..18492406 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:11798718..11798818 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018214.1chromosomeCM018214.1:17958488..17958588 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:11673298..11673398 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_13chromosomeKI_13:5858824..5858924 +Gossypioides kirkii genome ISU_v3n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:19686347..19686447 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:11847848..11847948 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:53179726..53179826 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr13chromosomeDt_chr13:48165734..48165834 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr13chromosomeAt_chr13:74486899..74486999 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:12113550..12113650 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A13chromosomeA13:17159610..17159710 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:12089222..12089322 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:17610035..17610135 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:11813016..11813116 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:17998123..17998223 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:12311854..12311954 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:17491243..17491343 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:11987866..11987966 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A13chromosomeA13:18170389..18170489 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:11990245..11990345 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:17883278..17883378 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:11395654..11395754 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A13chromosomeA13:18013766..18013866 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:18187041..18187141 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:12419336..12419436 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017648.1chromosomeCM017648.1:18933512..18933612 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:11989824..11989924 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017700.1chromosomeCM017700.1:17900272..17900372 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:12482443..12482543 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A13chromosomeA13:18822832..18822932 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:18094370..18094470 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:19463976..19464076 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:11586290..11586390 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
chr13chromosomechr13:9960641..9960741 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:9881329..9881429 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:12332406..12332506 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:10240530..10240630 +Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:7375412..7375512 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeChr13:9910242..9910342 +Gossypium lobatum (D7) genome ISU_v1n/a
E13chromosomeE13:18689752..18689851 +Gossypium stocksii (E1) genome NSF_v1n/a
F13chromosomeF13:15876807..15876907 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:139694233..139694333 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>TAMU_GH_TBb029I20f117 ID=TAMU_GH_TBb029I20f117; Name=TAMU_GH_TBb029I20f117; organism=Gossypium longicalyx; type=genetic_marker; length=105bp
ACCTGCAAAGTGGCATCTGGCAAAGGGAGAATTGAAGATGAATTTACATT
[C/T]TGCCACCCTGAGATGGGGTCTCACTCACTTATTCACTCTTTAGCT
ACTTT