TAMU_GH_TBb025M11r471, TAMU_GH_TBb025M11r471 (genetic_marker) Gossypium barbadense

Marker Overview
NameTAMU_GH_TBb025M11r471
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
SpeciesGossypium barbadense
PCR ConditionTm: optimum, 57 ; minimum, 55 ; maximum, 60 ; max difference, 2 ; product size: minimum, 50 bp; optimum, 50 bp; maximum, 100 bp
Max Length50
Publication[view all]
ContactStelly, David M.
CommentKASP assay uses a 3 primer system. Two that are allele specific, one for each SNP base and then 1 common that should not contain any SNP bases.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:7943939..7944039 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:7752741..7752841 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Dt_chr8chromosomeDt_chr8:4823738..4823838 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold9944supercontigscaffold9944:4830..4930 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D12chromosomeD12:7967159..7967259 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:7943803..7943903 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:7779979..7780079 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:7948944..7949044 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:7889859..7889959 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:7682409..7682509 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:7621582..7621682 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:7785561..7785661 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:7848864..7848964 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:7613979..7614079 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:8117281..8117381 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Sequence
>TAMU_GH_TBb025M11r471 ID=TAMU_GH_TBb025M11r471; Name=TAMU_GH_TBb025M11r471; organism=Gossypium barbadense; type=genetic_marker; length=105bp
AATAATAGTAGCAACCACTTTTATTTCAAGATTGGTGATGTTTGAATCTG
[A/T]AGTCGATAAAAGACCATTTCTCAAAGCCCAGAGCTCTACTTCTAT
AGCAA