USDA_CFB0207, USDA_CFB0207 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_CFB0207
AliasCFB0207
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
5' Flanking SequenceAATAATCTCTTATTCTGTTTTTTTCTTGAAGCAAATCAAAGCTAAAATTAGGTGGCATTA CACTCGTAT
3' Flanking SequenceTTTGATTTTGTTAACTAGTATGAATTG
SpeciesGossypium hirsutum
Publication[view all]
ContactFang, David D.
CommentSNP generated in Data2Bio, LLC, Ames, IA
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018219.1chromosomeCM018219.1:51808258..51808354 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018219.1chromosomeCM018219.1:51799051..51799147 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:46617019..46617114 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_05chromosomeD5_05:46607773..46607869 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_05chromosomeD10_05:11915777..11915873 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_05chromosomeD10_05:11894327..11894423 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr9chromosomeDt_chr9:28718533..28718629 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr9chromosomeDt_chr9:28709300..28709396 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:51038500..51038596 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D05chromosomeD05:51031452..51031548 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:52019549..52019645 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D05chromosomeGhir_D05:52012510..52012607 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:53043024..53043120 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:53772007..53772103 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:53762774..53762870 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:52413713..52413809 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D05chromosomeD05:52406668..52406764 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:51883738..51883834 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D05chromosomeGbar_D05:51874532..51874628 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
scaffold4781_objsupercontigscaffold4781_obj:228..324 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D05chromosomeD05:53733142..53733238 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:52583240..52583336 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017627.1chromosomeCM017627.1:52574021..52574117 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:53931166..53931261 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:52879119..52879215 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017705.1chromosomeCM017705.1:52869777..52869873 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:54650866..54650962 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D05chromosomeD05:54643822..54643918 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:47943791..47943887 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr05chromosomeChr05:47934559..47934655 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
chr09_6503361chromosomechr09_6503361:1144..1240 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:37661478..37661574 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:51161587..51161683 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:47704652..47704653 .Gossypium raimondii (D5) genome JGI_v2_a2.1Islam MS, Thyssen GN, Jenkins JN, and Fang DD. Detection, Validation, and Application of Genotyping-by-Sequencing Based Single Nucleotide Polymorphisms in Upland Cotton. The Plant Genome. 2015 March; 8(1):1-10.
Sequence
>USDA_CFB0207 ID=USDA_CFB0207; Name=USDA_CFB0207; organism=Gossypium hirsutum; type=genetic_marker; length=101bp
AATAATCTCTTATTCTGTTTTTTTCTTGAAGCAAATCAAAGCTAAAATTA
GGTGGCATTACACTCGTAT[A/T]TTTGATTTTGTTAACTAGTATGAATT
G