NAU_TM76404, NAU_TM76404 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM76404
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM76404
TypeSNP
SNP AllelesC/T
5' Flanking SequenceTATTCTGTCTGGCATTTATGGCATAATCTGTATGGCTTATGTGGCATTCTATTTGGCCTT
3' Flanking SequenceGTGGCATTGTGATTAGCCTTCGTGGCATTTTGTTAGCCTTTATGGTGTACTTTGATAAGT
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018225.1chromosomeCM018225.1:52419780..52419900 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:16109818..16109938 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
At_chr10chromosomeAt_chr10:26821473..26821593 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:50095685..50095805 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:54963231..54963351 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:54413222..54413342 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:54879522..54879642 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:52209504..52209624 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:52147084..52147204 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:55088566..55088686 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:54383341..54383461 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:55694150..55694270 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D11chromosomeD11:54760232..54760352 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:14417536..14417656 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr07chromosomeChr07:52153410..52153530 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_07chromosomeChr_07:34914971..34915091 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:31488888..31489008 +Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:27927251..27927371 +Gossypium gossypioides (D6) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch21_Dt.11N/A109.2TM76404View
Sequence
>NAU_TM76404 ID=NAU_TM76404; Name=NAU_TM76404; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
TATTCTGTCTGGCATTTATGGCATAATCTGTATGGCTTATGTGGCATTCT
ATTTGGCCTT[C/T]GTGGCATTGTGATTAGCCTTCGTGGCATTTTGTTA
GCCTTTATGGTGTACTTTGATAAGT