NAU_TM57872, NAU_TM57872 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM57872
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM57872
TypeSNP
SNP AllelesT/C
5' Flanking SequenceTAATACTCAGATTACAAACTACAAAATCAGTATGTAACACAACTATCTTCAAGATAATGG
3' Flanking SequenceTCATGGTGAACTGATTGTGCTGTATCTATAATATTTTCCATAAGTAGCGAAAATGGACGA
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018219.1chromosomeCM018219.1:29467388..29467508 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:28147978..28148098 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_05chromosomeD10_05:32372634..32372754 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr9chromosomeDt_chr9:34876024..34876144 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:30240407..30240527 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:30380777..30380897 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:29621251..29621371 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:30207803..30207923 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:29831565..29831685 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:30036654..30036774 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:29770203..29770323 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:29817101..29817221 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:30197319..30197439 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:29860025..29860145 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:30891813..30891933 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:28295464..28295584 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:28769558..28769678 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:25267969..25268089 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr09chromosomeChr09:29991174..29991294 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:23144936..23145056 +Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:20484484..20484604 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:23460632..23460752 +Gossypium lobatum (D7) genome ISU_v1n/a
F05chromosomeF05:32228353..32228473 +Gossypium longicalyx (F1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch19_Dt.05N/A103TM57872View
Sequence
>NAU_TM57872 ID=NAU_TM57872; Name=NAU_TM57872; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
TAATACTCAGATTACAAACTACAAAATCAGTATGTAACACAACTATCTTC
AAGATAATGG[C/T]TCATGGTGAACTGATTGTGCTGTATCTATAATATT
TTCCATAAGTAGCGAAAATGGACGA