NAU_TM39427, NAU_TM39427 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM39427
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM39427
TypeSNP
SNP AllelesC/T
5' Flanking SequenceGGACAAAGTTTCAACTTTCAGATGACAAGCGAGTGAAAGAGTTATTAAAAGACATGTGTT
3' Flanking SequenceTGAATTTTTCACCTCAAAACCAAAAAAGAATAAAAAGCTTTTTACTAGTAGCAGTCCACC
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018212.1chromosomeCM018212.1:103927383..103927503 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:12932484..12932604 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
A11chromosomeA11:83660151..83660271 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:112949159..112949279 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:111444336..111444456 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:109014487..109014607 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:105793465..105793585 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A11chromosomeGbar_A11:102349071..102349191 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:105488030..105488150 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:109307968..109308088 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:115909734..115909854 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:104430221..104430341 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:113731370..113731490 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:117808707..117808827 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:116121105..116121225 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1LMY28 x XLZ24, RIL (2018)AD_ch11_At.11N/A109.02TM39427View
Sequence
>NAU_TM39427 ID=NAU_TM39427; Name=NAU_TM39427; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
GGACAAAGTTTCAACTTTCAGATGACAAGCGAGTGAAAGAGTTATTAAAA
GACATGTGTT[C/T]TGAATTTTTCACCTCAAAACCAAAAAAGAATAAAA
AGCTTTTTACTAGTAGCAGTCCACC