NAU_TM06010, NAU_TM06010 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM06010
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM06010
TypeSNP
SNP AllelesC/T
5' Flanking SequenceACCAGCTCCTTGATCCAACAGTTTTGCCATATTACTTTTTTAACTCTACGTCATTTTTAA
3' Flanking SequenceCACTTTCTGTTTTAGTTCATTAAGAACATAGCAGAAGTCAATAGTCATGCTTAGTGGTAG
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018204.1chromosomeCM018204.1:4121248..4121368 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:108581009..108581129 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_02chromosomeD10_02:46719329..46719447 -Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold1148.1supercontigscaffold1148.1:8341..8461 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:3220358..3220478 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:4971242..4971362 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:4464632..4464752 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:4792233..4792353 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:4209047..4209167 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A03chromosomeGbar_A03:4150553..4150673 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:4230657..4230777 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:4450506..4450626 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:4822515..4822635 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:4425582..4425702 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:4877032..4877152 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:3952882..3953002 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:114242858..114242978 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr_03chromosomeChr_03:26602642..26602760 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr03chromosomeChr03:47912924..47913042 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr03chromosomeChr03:26901897..26902015 -Gossypium aridum (D4) genome ISU_v1n/a
Chr03chromosomeChr03:28798251..28798369 -Gossypium lobatum (D7) genome ISU_v1n/a
Chr02chromosomeChr02:5929462..5929583 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1LMY28 x XLZ24, RIL (2018)AD_ch03_At.03N/A23.7TM6010View
Sequence
>NAU_TM06010 ID=NAU_TM06010; Name=NAU_TM06010; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
ACCAGCTCCTTGATCCAACAGTTTTGCCATATTACTTTTTTAACTCTACG
TCATTTTTAA[C/T]CACTTTCTGTTTTAGTTCATTAAGAACATAGCAGA
AGTCAATAGTCATGCTTAGTGGTAG