NAU_TM00225, NAU_TM00225 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM00225
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM00225
TypeSNP
SNP AllelesC/A
5' Flanking SequenceAAGGGTTGTTTTCAAAGGACACTCTTGGAAAGGTAGTGGCTGAAGGGGAAGGTGATTCAG
3' Flanking SequenceAACTGTAGGCAATGAACCGCCGTGATCAGGTGGTTGTTGTTGAAGTTCATCCATTTCCAA
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018215.1chromosomeCM018215.1:4258915..4259035 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018202.1chromosomeCM018202.1:4720043..4720163 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:4057866..4057986 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:5236002..5236122 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_01chromosomeD10_01:56449539..56449659 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016614.1chromosomeCM016614.1:6478276..6478396 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold2385.1supercontigscaffold2385.1:250190..250310 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold235.1supercontigscaffold235.1:950976..951096 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:4029150..4029270 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:4427505..4427625 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:4589849..4589969 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:4892443..4892563 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:4324256..4324376 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:4652935..4653055 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:4318225..4318345 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:4892928..4893048 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:4445888..4446008 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A01chromosomeA01:4839839..4839959 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D01chromosomeGbar_D01:4697882..4698002 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:4663291..4663411 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:4557197..4557317 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A01chromosomeA01:4617885..4618005 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:5331620..5331740 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:4748004..4748124 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:4679734..4679854 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:4534504..4534624 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017688.1chromosomeCM017688.1:4756994..4757114 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:4693605..4693725 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A01chromosomeA01:4870313..4870433 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:4932771..4932891 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:5210559..5210679 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:4049850..4049970 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_01chromosomeB_01:5229685..5229805 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr_02chromosomeChr_02:3558992..3559112 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:4422215..4422335 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
E01chromosomeE01:6131598..6131718 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr01chromosomeChr01:193883235..193883355 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x Acala Maxxa, RIL (2018)AD_ch01_At.01N/A31.8TM225View
Sequence
>NAU_TM00225 ID=NAU_TM00225; Name=NAU_TM00225; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
AAGGGTTGTTTTCAAAGGACACTCTTGGAAAGGTAGTGGCTGAAGGGGAA
GGTGATTCAG[A/C]AACTGTAGGCAATGAACCGCCGTGATCAGGTGGTT
GTTGTTGAAGTTCATCCATTTCCAA