NAU_TM00001, NAU_TM00001 (genetic_marker) Gossypium hirsutum

Marker Overview
NameNAU_TM00001
dbSNP IDN/A
SNP Array ID
NAU_CottonSNP80K:NAU_TM00001
TypeSNP
SNP AllelesA/G
5' Flanking SequenceACAATCGTTCTATGCACTTAAAAAATTGCCATGAATAAATCAATATGTAAATCCCACTTC
3' Flanking SequenceACCTGACTTCCAAAAATTATCTTAAAATCGGCATGAAGAAATCAATACTTAAATCCGACT
SpeciesGossypium hirsutum
Publication[view all]
ContactGuo, Wang-Zhen
Contact
NameDetails
Guo, Wang-Zhen
First name:Wang-Zhen
Last name:Guo
Institution:Nanjing Agri Univ
Address:Weigang No.1, Nanjing, Jiangsu Prov 210095
Country:China
Email:moelab@njau.edu.cn
Phone:+086 25 84395311
Fax:+086 25 84395307
Keywords:Cotton Genomics
Last update:20-Sep-2011
Libraries
Library NameType
NAU_CottonSNP80KSNP_chip
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM018215.1chromosomeCM018215.1:134692..134812 +
CM018202.1chromosomeCM018202.1:76972..77092 +
D5_01chromosomeD5_01:180022..180142 +
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:175337..175457 +
D10_01chromosomeD10_01:60273062..60273182 -
CM016614.1chromosomeCM016614.1:370615..370735 +
scaffold280.1supercontigscaffold280.1:141187..141307 +
scaffold1755.1supercontigscaffold1755.1:177827..177947 -
D01chromosomeD01:128268..128388 +
A01chromosomeA01:150521..150641 +
Ghir_D01chromosomeGhir_D01:172712..172832 +
Ghir_A01chromosomeGhir_A01:194953..195073 +
D01chromosomeD01:168837..168957 +
A01chromosomeA01:151224..151344 +
D01chromosomeD01:137539..137659 +
A01chromosomeA01:198189..198309 +
D01chromosomeD01:153468..153588 +
A01chromosomeA01:189197..189317 +
Gbar_D01chromosomeGbar_D01:176795..176915 +
Gbar_A01chromosomeGbar_A01:61513..61633 +
D01chromosomeD01:154440..154560 +
A01chromosomeA01:155343..155463 +
CM017623.1chromosomeCM017623.1:167618..167738 +
CM017610.1chromosomeCM017610.1:181456..181576 +
CM017649.1chromosomeCM017649.1:177962..178082 +
CM017636.1chromosomeCM017636.1:140012..140132 +
CM017701.1chromosomeCM017701.1:163903..164023 +
CM017688.1chromosomeCM017688.1:184809..184929 +
D01chromosomeD01:123662..123782 +
A01chromosomeA01:188166..188286 +
Chr01chromosomeChr01:111067..111187 +
Chr01chromosomeChr01:108219..108339 +
Chr01chromosomeChr01:159636..159756 +
B_01chromosomeB_01:175385..175505 +
Chr02chromosomeChr02:163383..163503 +
Chr_02chromosomeChr_02:116428..116548 +
Chr02chromosomeChr02:356575..356695 +
Chr02chromosomeChr02:107985..108105 +
Chr02chromosomeChr02:105312..105432 +
Chr02chromosomeChr02:106002..106122 +
E01chromosomeE01:186699..186819 +
Chr01chromosomeChr01:199722114..199722234 -
Sequence
>NAU_TM00001 ID=NAU_TM00001; Name=NAU_TM00001; organism=Gossypium hirsutum; type=genetic_marker; length=125bp
ACAATCGTTCTATGCACTTAAAAAATTGCCATGAATAAATCAATATGTAA
ATCCCACTTC[A/G]ACCTGACTTCCAAAAATTATCTTAAAATCGGCATG
AAGAAATCAATACTTAAATCCGACT