TAMU_Gb379_000296, TAMU_Gb379_000296 (genetic_marker) Gossypium barbadense

Marker Overview
NameTAMU_Gb379_000296
AliasGb379_000296
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
5' Flanking SequenceTAAAAACATTGTGCCAAAGGATACGACAAAAGGCTTTTGAATGGTGGAGC
3' Flanking SequenceGCTACAAGATGATGTTAGTTTTACATGCGACTACTTAGCCTTCTTAAGGA
SpeciesGossypium barbadense
Germplasm3-79
Source TypeRNA
Publication[view all]
ContactStelly, David M.
Commentclass_I: no additional polymorphism was found to exist in the same contig
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:53585426..53585526 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:49564417..49564517 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:48191826..48191926 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_13chromosomeKI_13:35036632..35036732 -Gossypioides kirkii genome ISU_v3n/a
CM016626.1chromosomeCM016626.1:140599425..140599525 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr13chromosomeDt_chr13:19807746..19807846 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:49373918..49374018 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:52550675..52550775 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:53678751..53678851 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:52716300..52716400 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:49642165..49642265 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:49239378..49239478 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:50497665..50497765 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:50245101..50245201 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:53539105..53539202 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:50562568..50562668 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:53746441..53746541 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:48185855..48185955 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:14450682..14450782 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:49670633..49670733 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:36368838..36368938 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:34431730..34431830 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:52115766..52115866 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:33759049..33759149 -Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:32952284..32952384 -Gossypium lobatum (D7) genome ISU_v1n/a
E13chromosomeE13:99922432..99922532 -Gossypium stocksii (E1) genome NSF_v1n/a
F13chromosomeF13:84129681..84129781 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:19768054..19768154 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
3-79accession
Sequence
>TAMU_Gb379_000296 ID=TAMU_Gb379_000296; Name=TAMU_Gb379_000296; organism=Gossypium barbadense; type=genetic_marker; length=105bp
TAAAAACATTGTGCCAAAGGATACGACAAAAGGCTTTTGAATGGTGGAGC
[A/T]GCTACAAGATGATGTTAGTTTTACATGCGACTACTTAGCCTTCTT
AAGGA