PGML0656, PGML0656 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0656
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TCT)14
Product Length184
Publication[view all]
CommentBAC_ID=FITB10409.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:60335235..60335400 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A08chromosomeA08:113682073..113682235 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:56760400..56760565 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:109086204..109086366 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:53092639..53092822 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_08chromosomeKI_08:33574448..33574613 +Gossypioides kirkii genome ISU_v3n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:118646958..118647120 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_08chromosomeD10_08:8087952..8088122 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016621.1chromosomeCM016621.1:13583287..13583452 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold347.1supercontigscaffold347.1:245812..245977 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold149.1supercontigscaffold149.1:588895..589057 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:56966796..56966961 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A08chromosomeA08:94455941..94456103 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:59550363..59550528 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:112321154..112321316 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:60207245..60207410 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:115239148..115239310 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:59411052..59411217 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:115136758..115136920 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:56689179..56689344 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A08chromosomeA08:111045456..111045618 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D08chromosomeGbar_D08:56796787..56796952 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:109764016..109764178 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:58722116..58722281 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A08chromosomeA08:110859822..110859984 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:58292052..58292217 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017617.1chromosomeCM017617.1:109302252..109302414 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:60501193..60501358 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:118744509..118744671 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:57181208..57181373 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017695.1chromosomeCM017695.1:109903877..109904039 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:60100522..60100687 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A08chromosomeA08:117031430..117031592 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:121281642..121281804 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:122295729..122295891 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:53979258..53979441 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:93413959..93414133 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:55393448..55393610 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr04chromosomechr04:41572724..41572891 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_04chromosomeChr_04:38055113..38055403 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:57713123..57713291 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:36444036..36444206 +Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:30661740..30661904 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr04chromosomeChr04:37048723..37048887 +Gossypium lobatum (D7) genome ISU_v1n/a
E08chromosomeE08:108499799..108499970 -Gossypium stocksii (E1) genome NSF_v1n/a
F08chromosomeF08:95434574..95434748 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr08chromosomeChr08:18746460..18746619 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0656 ID=PGML0656; Name=PGML0656; organism=Gossypium raimondii; type=genetic_marker; length=184bp
TGCCTCCTCGTTTCTTCACTGCGACTATTCAAAAACCCGTGGTTTGTTTC
TCTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTACCAGGGT
TCAACCCAGTGGGAAGCATCTATGTTTTCGACGCCGATTGCTCTTACTAC
CCCTCAAGGCTACTGCCGATCAACAAGGTTTCAT