PGML0655, PGML0655 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0655
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TCA)6
Product Length263
Publication[view all]
CommentBAC_ID=FITB10409.x1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:60334981..60335254 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A08chromosomeA08:113681821..113682092 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:56760142..56760419 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:109085952..109086223 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:53092396..53092658 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_08chromosomeKI_08:33574197..33574467 +Gossypioides kirkii genome ISU_v3n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:118646703..118646977 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_08chromosomeD10_08:8088103..8088377 -Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold347.1supercontigscaffold347.1:245558..245831 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold149.1supercontigscaffold149.1:588643..588914 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:56966542..56966815 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A08chromosomeA08:94455689..94455960 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:59550109..59550382 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:112320902..112321173 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:60206991..60207264 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:115238896..115239167 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:59410798..59411071 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:115136506..115136777 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:56688925..56689198 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A08chromosomeA08:111045204..111045475 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D08chromosomeGbar_D08:56796529..56796806 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:109763764..109764035 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:58721858..58722135 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A08chromosomeA08:110859570..110859841 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:58291798..58292071 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017617.1chromosomeCM017617.1:109302001..109302271 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:60500944..60501212 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:57180956..57181227 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017695.1chromosomeCM017695.1:109903622..109903896 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:60100268..60100541 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A08chromosomeA08:117031178..117031449 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:121281387..121281661 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:122295474..122295748 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:53979015..53979277 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:93413701..93413978 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:55393193..55393467 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr04chromosomechr04:41572466..41572743 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_04chromosomeChr_04:38054852..38055132 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:57712871..57713142 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:36443787..36444055 +Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:30661488..30661759 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr04chromosomeChr04:37048471..37048742 +Gossypium lobatum (D7) genome ISU_v1n/a
F08chromosomeF08:95434310..95434593 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr08chromosomeChr08:18746600..18746874 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>PGML0655 ID=PGML0655; Name=PGML0655; organism=Gossypium raimondii; type=genetic_marker; length=263bp
CGGTTATCCTTTGAAGCCAAGACAATATACCCAAGACCGTTGCATTTCCC
TCCACACGTTCCTTAGTTGCCTTATCTTTGAGCTGTCTTTTTTTCCCTCC
AACAATCCCTTCCCAAACAAAACATAACAACAACAATAATAATCACAAAT
ATCTCGCACCAAAACCCAAATAACCCACCTGCTTCCCCATGCCTTATTCA
TCATCATCATCATCAATGGCTAGCAAATTGGCTTTCACTTTGATGCCTCC
TCGTTTCTTCACT