PGML0011, PGML0011 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0011
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(ATAGAA)3
Primer 1PGML0011_F: GTTGAGTTAGCAACCCGAAA
Primer 2PGML0011_R: TCCATTTATCCTCGTTTGGC
Product Length328
Publication[view all]
CommentBAC_ID=FITB7347.y2
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A12chromosomeA12:36151833..36152150 -
A03chromosomeA03:33406357..33406674 -
CM018204.1chromosomeCM018204.1:35655727..35656045 -
D10_10chromosomeD10_10:49945058..49945376 +
D10_07chromosomeD10_07:8503024..8503348 +
At_chr6chromosomeAt_chr6:47363092..47363409 +
At_chr13chromosomeAt_chr13:80723810..80724127 +
Scaffold2612supercontigScaffold2612:4442..4759 +
Ghir_A03chromosomeGhir_A03:37548134..37548451 -
A12chromosomeA12:70070871..70071188 -
A03chromosomeA03:36807003..36807320 -
A12chromosomeA12:67235318..67235635 -
A03chromosomeA03:36581644..36581961 -
A12chromosomeA12:64453958..64454275 -
A03chromosomeA03:34221104..34221421 -
Gbar_A03chromosomeGbar_A03:35388408..35388726 -
A03chromosomeA03:35797465..35797783 -
CM017621.1chromosomeCM017621.1:64538685..64539002 -
CM017647.1chromosomeCM017647.1:54409499..54409816 -
CM017690.1chromosomeCM017690.1:35798060..35798377 -
A12chromosomeA12:69840523..69840840 -
Chr12chromosomeChr12:24015877..24016194 +
Chr12chromosomeChr12:75965817..75966134 -
Contig00352chromosomeContig00352:19252..19579 +
Contig00189chromosomeContig00189:13547..13873 +
Contig00183chromosomeContig00183:6926..7253 +
Contig00123chromosomeContig00123:3231..3556 +
Contig00084chromosomeContig00084:6058..6382 +
Contig00083chromosomeContig00083:7147..7474 +
Chr02chromosomeChr02:15053211..15053536 +
Chr08chromosomeChr08:49934582..49934900 +
Chr04chromosomeChr04:18840367..18840685 +
Chr05chromosomeChr05:51632787..51633105 -
Chr01chromosomeChr01:47656859..47657179 -
chr02chromosomechr02:30014682..30014993 -
Chr06chromosomeChr06:32812900..32813220 -
Chr02chromosomeChr02:39196623..39196934 -
Chr12chromosomeChr12:2127195..2127512 -
Chr11chromosomeChr11:11789666..11789991 -
E02chromosomeE02:12679630..12679947 -
F05chromosomeF05:17534797..17535115 -
Sequence
>PGML0011 ID=PGML0011; Name=PGML0011; organism=Gossypium raimondii; type=genetic_marker; length=328bp
GTTGAGTTAGCAACCCGAAAAAAATTAGAATATGTAGATCCAATCGGAAT
AAAAAAATGGAATTGCACTAGGCAATCAAAACACGAAATTAGCAAAAATT
GGAATAAAAAAAAAGACACGAAATTCTCAGATAAAACCATAGAAATAGAA
ATAGAATAAGTGAAAATTTGCGGACCGCCTCCTGTCTTATTCATTCCATT
GTTATCCATTTTTTGTGTTTCAATACAATTACAATAAAAAAAAATTATTG
TATCACAACAAATTCAAAGAAAGAACCCATTATTTGCATTATTTGAATCA
AGTGAAGTGCCAAACGAGGATAAATGGA