USDA_SNP0485, USDA_SNP0485 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0485
dbSNP IDN/A
TypeSNP
SNP AllelesC/G
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018218.1chromosomeCM018218.1:42572061..42572123 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018205.1chromosomeCM018205.1:67118037..67118099 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:11380952..11381014 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_2_4chromosomeKI_2_4:6318682..6318744 +Gossypioides kirkii genome ISU_v3n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:14168020..14168082 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_04chromosomeD10_04:41476413..41476475 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016617.1chromosomeCM016617.1:107976790..107976852 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr6chromosomeAt_chr6:14576001..14576063 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr12chromosomeDt_chr12:17398826..17398888 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold1000_A04supercontigscaffold1000_A04:40542..40604 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold78492supercontigscaffold78492:497..559 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D04chromosomeD04:39380314..39380376 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Scaffold3264supercontigScaffold3264:20614..20676 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D04chromosomeGhir_D04:44324721..44324783 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:45329804..45329866 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:73772668..73772730 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:44223841..44223903 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:70810367..70810429 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:42151905..42151967 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A04chromosomeA04:66419457..66419519 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D04chromosomeGbar_D04:40674177..40674239 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A04chromosomeGbar_A04:67552843..67552905 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:45826079..45826141 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A04chromosomeA04:68147806..68147868 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:42935023..42935085 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:45569299..45569361 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017639.1chromosomeCM017639.1:77349732..77349794 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:42883112..42883174 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017691.1chromosomeCM017691.1:67726685..67726747 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:45991185..45991247 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A04chromosomeA04:74407142..74407204 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:94220708..94220770 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:95822424..95822486 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr04chromosomeChr04:11337206..11337268 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_02chromosomeB_02:14912994..14913056 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr12chromosomeChr12:42493082..42493144 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr12chromosomechr12:20253688..20253750 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_12chromosomeChr_12:16204175..16204237 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr12chromosomeChr12:42186732..42186794 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr12chromosomeChr12:18948501..18948563 -Gossypium aridum (D4) genome ISU_v1n/a
Chr12chromosomeChr12:14664866..14664928 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr12chromosomeChr12:17977977..17978039 -Gossypium lobatum (D7) genome ISU_v1n/a
E04chromosomeE04:55891021..55891083 +Gossypium stocksii (E1) genome NSF_v1n/a
F04chromosomeF04:77843400..77843462 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr04chromosomeChr04:141648952..141649014 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0485 ID=USDA_SNP0485; Name=USDA_SNP0485; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGTTTTACCCATTATTTCATCCAGG[C/G]GCATCGAAGATGAAATC
TGGGAGCTGAGTTTCTC