USDA_SNP0437, USDA_SNP0437 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0437
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018225.1chromosomeCM018225.1:8588473..8588534 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:9347965..9348027 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:57378002..57378063 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_11chromosomeKI_11:7163492..7163555 -Gossypioides kirkii genome ISU_v3n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:114862448..114862510 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:8535448..8535509 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:12294461..12294523 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr7chromosomeAt_chr7:9834971..9835033 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr7chromosomeAt_chr7:8042862..8042923 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:9133776..9133837 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:9095872..9095934 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:8955503..8955564 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:9660480..9660542 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:8826683..8826744 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:9309726..9309788 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:9016848..9016909 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:9506770..9506832 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:8954557..8954618 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:9707701..9707763 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:8805843..8805904 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:9205480..9205542 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:8818657..8818718 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:9398577..9398639 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:8755929..8755990 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:9534776..9534838 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:9071993..9072054 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:9653438..9653500 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:8848549..8848610 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:9544181..9544243 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:9175061..9175122 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:9828774..9828836 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:9820544..9820606 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:9443125..9443187 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:54864074..54864135 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:9275657..9275719 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:8479514..8479575 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07_6504249chromosomechr07_6504249:1100..1161 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:7999502..7999563 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:8782603..8782664 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:7041686..7041747 -Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:6328624..6328686 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:7212235..7212296 -Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:10603457..10603519 -Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:8335342..8335404 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:174085005..174085067 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0437 ID=USDA_SNP0437; Name=USDA_SNP0437; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGTGCAGTGCATGTAATTTATCCCCTGTTTGTAATCATATAGTAGC[
A/G]TTTGCCTAGAGGG