USDA_SNP0354, USDA_SNP0354 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0354
dbSNP IDN/A
TypeSNP
SNP AllelesG/C
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018219.1chromosomeCM018219.1:19236205..19236268 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:21234185..21234247 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:18022884..18022947 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_05chromosomeKI_05:16222208..16222271 -Gossypioides kirkii genome ISU_v3n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:21725913..21725975 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:42281050..42281113 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016618.1chromosomeCM016618.1:90829924..90829987 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr9chromosomeAt_chr9:39450013..39450075 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr9chromosomeDt_chr9:48707713..48707776 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:19618675..19618738 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:19571114..19571176 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:19717321..19717384 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:21782650..21782712 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:19252884..19252947 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:21152045..21152107 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:19554056..19554119 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:21812771..21812833 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:19432301..19432364 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:21977349..21977411 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:19598832..19598895 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:20902909..20902971 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:19596121..19596184 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:21613041..21613103 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:19419828..19419891 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:21384543..21384605 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:19862859..19862922 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:21752193..21752255 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:19536984..19537047 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:21126000..21126062 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:20014715..20014778 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:22133068..22133130 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:23233793..23233855 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:21638313..21638375 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:18100419..18100482 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:64764441..64764504 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:18724892..18724955 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:16790049..16790112 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:15606622..15606685 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:19295934..19295997 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:15863467..15863530 -Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:13850775..13850838 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:16120482..16120545 -Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:23474065..23474128 -Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:18582197..18582260 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr05chromosomeChr05:109274554..109274617 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0354 ID=USDA_SNP0354; Name=USDA_SNP0354; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGGAGATTGATCTCCACGGTTTTCAATTT[C/G]GTTTAACAATTTT
GTGACTAATTTGTGTCC