USDA_SNP0346, USDA_SNP0346 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0346
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018206.1chromosomeCM018206.1:7324916..7324978 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:6082529..6082591 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:7371574..7371636 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016626.1chromosomeCM016626.1:10741002..10741064 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr9chromosomeAt_chr9:54083397..54083459 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:6821021..6821083 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:7462695..7462757 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A05chromosomeA05:7253214..7253276 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:7465062..7465124 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:7845955..7846017 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A05chromosomeGbar_A05:7024649..7024711 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:7595461..7595523 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:7423713..7423775 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:7513150..7513212 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:7336153..7336215 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:7641761..7641823 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:7973473..7973535 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:7249991..7250053 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:6117133..6117195 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:78744635..78744697 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:6292572..6292634 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:5857373..5857435 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr09chromosomeChr09:6520324..6520386 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:5906950..5907012 -Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:5777701..5777763 -Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:7984472..7984534 -Gossypium stocksii (E1) genome NSF_v1n/a
Chr13chromosomeChr13:190299030..190299092 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0346 ID=USDA_SNP0346; Name=USDA_SNP0346; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGGAAGGGGACCACAGCACTAAGTT[C/T]TTCCATAATGCTGTTGC
TGTTACAAAGAATAAGC