USDA_SNP0344, USDA_SNP0344 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0344
dbSNP IDN/A
TypeSNP
SNP AllelesT/A
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018212.1chromosomeCM018212.1:108717906..108717968 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:108731824..108731886 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_11chromosomeKI_11:50801660..50801722 +Gossypioides kirkii genome ISU_v3n/a
KI_11chromosomeKI_11:50762225..50762287 +Gossypioides kirkii genome ISU_v3n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:10653501..10653563 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:10634643..10634705 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold5635.1supercontigscaffold5635.1:9271..9333 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A11chromosomeA11:86930283..86930345 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold40582supercontigscaffold40582:227..289 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:116597027..116597089 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:116576208..116576270 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:114966931..114966993 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
scaffold2292_obj_A11supercontigscaffold2292_obj_A11:13824..13886 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:112733537..112733599 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:112713242..112713304 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:109526997..109527059 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:109506698..109506760 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A11chromosomeGbar_A11:106664873..106664935 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:106650955..106651017 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:109589237..109589299 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:109568533..109568595 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:112978005..112978067 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:112991950..112992012 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:119888318..119888380 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:119877654..119877716 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:108775955..108776017 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:117333816..117333878 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:117354705..117354767 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:124315680..124315742 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:124296793..124296855 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:123715802..123715864 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:123696930..123696992 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_11chromosomeB_11:94852584..94852646 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:65120697..65120759 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
E11chromosomeE11:107509901..107509963 +Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:93333970..93334032 +Gossypium longicalyx (F1) genome NSF_v1n/a
F11chromosomeF11:93318776..93318838 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>USDA_SNP0344 ID=USDA_SNP0344; Name=USDA_SNP0344; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGGAACTTGTTCTCAAGCATTGCAAGAGTTAATAACTCGTAAGTG[A
/T]TAAGACAACAACAA