USDA_SNP0342, USDA_SNP0342 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0342
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018206.1chromosomeCM018206.1:99524608..99524670 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018218.1chromosomeCM018218.1:2676117..2676179 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_06chromosomeKI_06:29276651..29276713 -Gossypioides kirkii genome ISU_v3n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:95457130..95457192 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016617.1chromosomeCM016617.1:3578801..3578863 -Gossypium australe (G2) genome CRI_v1.1n/a
A05chromosomeA05:89303577..89303639 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:106302938..106303000 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
scaffold133_subseq_3724056_3844486_obj_A05supercontigscaffold133_subseq_3724056_3844486_obj_A05:45347..45409 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:106406866..106406928 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:104360680..104360742 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A05chromosomeGbar_A05:99621569..99621631 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D04chromosomeGbar_D04:2649695..2649757 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A05chromosomeA05:104506958..104507020 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D04chromosomeD04:2695326..2695388 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017614.1chromosomeCM017614.1:101958036..101958098 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017640.1chromosomeCM017640.1:110458131..110458193 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017692.1chromosomeCM017692.1:102475014..102475076 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017704.1chromosomeCM017704.1:2879889..2879951 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A05chromosomeA05:108179167..108179229 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:3316526..3316588 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:3185844..3185906 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:2817832..2817894 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr12chromosomeChr12:2802837..2802899 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr12chromosomeChr12:1945273..1945335 -Gossypium gossypioides (D6) genome ISU_v1n/a
F04chromosomeF04:2834189..2834251 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr04chromosomeChr04:3302293..3302355 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0342 ID=USDA_SNP0342; Name=USDA_SNP0342; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGGAACCACCTTGTCAGGAAGAGCAACC[A/G]TCATTGTTGAGCCA
TTTTCCCTAGCCTTATC