USDA_SNP0341, USDA_SNP0341 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0341
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018227.1chromosomeCM018227.1:54839085..54839147 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018214.1chromosomeCM018214.1:102817317..102817379 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:53938929..53938991 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:118132524..118132586 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:55696169..55696231 +Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr6chromosomeAt_chr6:3441545..3441607 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr13chromosomeAt_chr13:25518402..25518464 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:55034139..55034201 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A13chromosomeA13:74909799..74909861 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:57992835..57992897 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:102711077..102711139 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:58912987..58913049 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:104939323..104939385 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:58142261..58142323 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:103171978..103172040 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:54863511..54863573 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A13chromosomeA13:101663088..101663150 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:54592571..54592633 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:103769784..103769846 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:55804833..55804895 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A13chromosomeA13:107142377..107142439 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:104767981..104768043 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017648.1chromosomeCM017648.1:109830145..109830207 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017648.1chromosomeCM017648.1:109794137..109794199 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:55399882..55399944 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017700.1chromosomeCM017700.1:104847495..104847557 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:59246880..59246942 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A13chromosomeA13:105908292..105908354 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:111914724..111914786 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:116478770..116478832 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:53930443..53930505 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:7433061..7433123 -Gossypium anomalum (B1) genome NSF_v1n/a
chr13chromosomechr13:40650983..40651045 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr13chromosomeChr13:38062804..38062866 +Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:36966661..36966723 +Gossypium lobatum (D7) genome ISU_v1n/a
E13chromosomeE13:108265879..108265941 +Gossypium stocksii (E1) genome NSF_v1n/a
F13chromosomeF13:90376726..90376788 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>USDA_SNP0341 ID=USDA_SNP0341; Name=USDA_SNP0341; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGGAAACTCAAGAAGCAGA[A/G]ATTAAGATGCTTAGGAAGACTTT
GAAATTCAAAGCGACTC