USDA_SNP0340, USDA_SNP0340 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0340
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018219.1chromosomeCM018219.1:21777076..21777138 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:24084376..24084438 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:20456073..20456135 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_05chromosomeKI_05:18280036..18280098 -Gossypioides kirkii genome ISU_v3n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:24836729..24836791 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:39972697..39972759 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016618.1chromosomeCM016618.1:87091477..87091539 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr11chromosomeDt_chr11:6186634..6186696 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr9chromosomeAt_chr9:37888357..37888419 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:22022281..22022343 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:22086400..22086462 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:22296185..22296247 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:24666817..24666879 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:21760121..21760183 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:23954387..23954449 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:22135605..22135667 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:24712685..24712747 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:22017565..22017627 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:24846570..24846632 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:22059722..22059784 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:23814111..23814173 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:22031587..22031649 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:24452112..24452174 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:21897867..21897929 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:24300612..24300674 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:22323371..22323433 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:24631014..24631076 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:21991439..21991501 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:24008104..24008166 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:22635497..22635559 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:25100766..25100828 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:24736894..24736956 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:20546436..20546498 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:61798437..61798499 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:21012020..21012082 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:18746601..18746663 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:17348356..17348418 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:21658692..21658754 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:17645258..17645320 -Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:15480697..15480759 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:18065267..18065329 -Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:26760417..26760479 -Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:21141666..21141728 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr05chromosomeChr05:104589479..104589541 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0340 ID=USDA_SNP0340; Name=USDA_SNP0340; organism=Gossypium hirsutum; type=genetic_marker; length=68bp
TGCAGGAAACCTTCCACCACCGCCTTCGAAGTTTAATCAGAGACAGCAGT
TCTTTGAACAACA[A/T]