USDA_SNP0339, USDA_SNP0339 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0339
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018225.1chromosomeCM018225.1:7870956..7871018 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:8595041..8595103 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:58056271..58056333 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_11chromosomeKI_11:6656243..6656305 -Gossypioides kirkii genome ISU_v3n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:115700911..115700973 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:7826020..7826082 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr7chromosomeDt_chr7:1618807..1618869 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr7chromosomeAt_chr7:8786406..8786468 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:8426359..8426421 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:8272073..8272135 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:8228925..8228987 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:8867324..8867386 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:8106773..8106835 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:8528621..8528683 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:8289912..8289974 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:8735916..8735978 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:8227125..8227187 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:8910552..8910614 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:8088627..8088689 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:8452495..8452557 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:8103706..8103768 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:8642372..8642434 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:8010430..8010492 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:8790676..8790738 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:8357309..8357371 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:8883141..8883203 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:8136030..8136092 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:8765509..8765571 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:8440581..8440643 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:9034581..9034643 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:8965606..8965668 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:8615393..8615455 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:55548244..55548306 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:8573159..8573221 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:7817555..7817617 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:6945237..6945299 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:7468974..7469036 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:8093752..8093814 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:6534929..6534991 -Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:5902267..5902329 -Gossypium gossypioides (D6) genome ISU_v1n/a
E11chromosomeE11:9683447..9683509 -Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:7643003..7643065 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>USDA_SNP0339 ID=USDA_SNP0339; Name=USDA_SNP0339; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGGAAAATGTCTTTTCATTTTTTCCAGCAGAATTGGGGGA[C/T]CC
CAGATGAAGTAATCATT