USDA_SNP0334, USDA_SNP0334 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0334
dbSNP IDN/A
TypeSNP
SNP AllelesC/G
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018226.1chromosomeCM018226.1:5636577..5636639 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018213.1chromosomeCM018213.1:4890298..4890360 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:51875355..51875417 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
tig00015610_CRI-A2_v1.0.a1chromosometig00015610_CRI-A2_v1.0.a1:759168..759230 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016625.1chromosomeCM016625.1:22137388..22137450 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr8chromosomeDt_chr8:1718802..1718864 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr8chromosomeAt_chr8:45573199..45573261 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:5677113..5677175 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A12chromosomeA12:4993306..4993368 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:5722053..5722115 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:4999435..4999497 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:5632694..5632756 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:4795083..4795145 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:5742255..5742317 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:5054453..5054515 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:5706234..5706296 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A12chromosomeA12:5023824..5023886 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:5566098..5566160 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:5004470..5004532 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:5554626..5554688 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A12chromosomeA12:4825547..4825609 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:5564469..5564531 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017621.1chromosomeCM017621.1:4738393..4738455 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:5597748..5597810 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017647.1chromosomeCM017647.1:5074803..5074865 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:5660418..5660480 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017699.1chromosomeCM017699.1:4685371..4685433 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:5876575..5876637 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A12chromosomeA12:5068411..5068473 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:7367488..7367550 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:7349588..7349650 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:5535241..5535303 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:8322943..8323004 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr08chromosomeChr08:5482070..5482132 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08_6464414chromosomechr08_6464414:893..955 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:5271301..5271363 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:5499956..5500018 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:4862242..4862304 +Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:3618126..3618188 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:4682229..4682291 +Gossypium lobatum (D7) genome ISU_v1n/a
E12chromosomeE12:7783307..7783369 +Gossypium stocksii (E1) genome NSF_v1n/a
F12chromosomeF12:6321655..6321717 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr12chromosomeChr12:148843897..148843959 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0334 ID=USDA_SNP0334; Name=USDA_SNP0334; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGCTTTCGCTACGGACCAGAATGGTTACGACGTT[C/G]CTTTTATC
ACTCATTCGGCACATCA