USDA_SNP0333, USDA_SNP0333 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0333
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018222.1chromosomeCM018222.1:59850527..59850589 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:112757690..112757752 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:56004549..56004611 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_08chromosomeKI_08:35338285..35338347 -Gossypioides kirkii genome ISU_v3n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:122552506..122552568 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_08chromosomeD10_08:5325149..5325211 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016621.1chromosomeCM016621.1:8446789..8446851 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold2839.1supercontigscaffold2839.1:76769..76831 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr10chromosomeAt_chr10:76453371..76453433 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:60326313..60326375 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A08chromosomeA08:97750205..97750267 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:62785162..62785224 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:116163494..116163556 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:63212474..63212536 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:118865715..118865777 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:62622134..62622196 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:118998728..118998790 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:59900195..59900257 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A08chromosomeA08:114931963..114932025 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D08chromosomeGbar_D08:59969452..59969514 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:113397619..113397681 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:61834043..61834105 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A08chromosomeA08:114438520..114438582 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:61474752..61474814 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017617.1chromosomeCM017617.1:112925046..112925108 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:63698458..63698520 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:122517750..122517812 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:60232834..60232896 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017695.1chromosomeCM017695.1:113592345..113592407 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:63397484..63397546 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A08chromosomeA08:120863905..120863967 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:125190000..125190062 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:126144940..126145002 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:56884834..56884896 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:97615244..97615306 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:58335891..58335953 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr04chromosomechr04:44029086..44029148 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_04chromosomeChr_04:40828626..40828688 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:60745031..60745093 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:38557799..38557861 -Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:32501633..32501695 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr04chromosomeChr04:39465204..39465266 -Gossypium lobatum (D7) genome ISU_v1n/a
E08chromosomeE08:114864212..114864274 -Gossypium stocksii (E1) genome NSF_v1n/a
F08chromosomeF08:99222724..99222786 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr08chromosomeChr08:9670480..9670542 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0333 ID=USDA_SNP0333; Name=USDA_SNP0333; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGCTTCATTTCCAATTCTCAACAGTACAGCAATAAA[C/T]TCCACA
ATCTGAAATAAAAGCAA