USDA_SNP0297, USDA_SNP0297 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0297
dbSNP IDN/A
TypeSNP
SNP AllelesA/C
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018219.1chromosomeCM018219.1:5198814..5198876 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:6071238..6071300 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:4969215..4969277 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:6131644..6131706 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:55521397..55521459 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:8850517..8850579 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold1988.1supercontigscaffold1988.1:291361..291423 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr9chromosomeDt_chr9:63982894..63982956 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A05chromosomeA05:5799456..5799518 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold4078_D05supercontigscaffold4078_D05:12220..12282 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:5509225..5509287 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:6208481..6208543 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:5311005..5311067 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:6033417..6033479 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:5440509..5440571 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:6179176..6179238 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:5333457..5333519 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:6582754..6582816 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:5416586..5416648 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:5757755..5757817 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:5515990..5516052 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:6324813..6324875 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:5355630..5355692 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:6187057..6187119 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:5683003..5683065 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:6197868..6197930 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:5404864..5404926 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:6084606..6084668 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:5475087..5475149 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:6353575..6353637 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:6515834..6515896 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:6006296..6006358 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:5000914..5000976 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:80113451..80113513 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:5123497..5123559 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:4828338..4828400 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:5169919..5169981 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:5301566..5301628 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:4834757..4834819 +Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:4041167..4041229 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:4731918..4731980 +Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:6496168..6496230 +Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:5193184..5193246 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>USDA_SNP0297 ID=USDA_SNP0297; Name=USDA_SNP0297; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGCATATTCAGTCTGTT[A/C]TTTTCAGTATCCAAATTTTGGAGTA
GAAACCAATTACTACCA