USDA_SNP0249, USDA_SNP0249 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0249
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018220.1chromosomeCM018220.1:60343875..60343937 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018207.1chromosomeCM018207.1:113686509..113686571 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:58502843..58502905 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:128684699..128684761 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:2461762..2461824 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:3504707..3504769 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold138802supercontigscaffold138802:240..302 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D06chromosomeD06:61432083..61432145 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A06chromosomeA06:101042315..101042377 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:64155825..64155887 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:121465024..121465086 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:62880676..62880738 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:123983778..123983840 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:63523464..63523526 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:123540277..123540339 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:60609806..60609868 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A06chromosomeA06:119331319..119331381 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:60560107..60560169 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:112685481..112685543 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:60398157..60398219 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A06chromosomeA06:115736359..115736421 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:60768411..60768473 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017615.1chromosomeCM017615.1:119051516..119051578 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:64303509..64303571 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:124354259..124354321 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:60936094..60936156 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017693.1chromosomeCM017693.1:116981400..116981462 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:63990541..63990603 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:125624663..125624725 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:126235716..126235778 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:128398707..128398769 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:58146676..58146738 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:1815193..1815255 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:60718598..60718660 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:46614435..46614497 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:41546141..41546203 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:62358764..62358826 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:39663896..39663958 +Gossypium aridum (D4) genome ISU_v1n/a
Unplaced_3474548chromosomeUnplaced_3474548:22914..22976 +Gossypium gossypioides (D6) genome ISU_v1n/a
E06chromosomeE06:3233413..3233475 -Gossypium stocksii (E1) genome NSF_v1n/a
F06chromosomeF06:95596796..95596858 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr06chromosomeChr06:3360717..3360779 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0249 ID=USDA_SNP0249; Name=USDA_SNP0249; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGATATCCCTTTAAGTAAATTCCTTTGAGCAA[C/T]TTCATTAGCA
GTCATGCCAAATGAATG