USDA_SNP0247, USDA_SNP0247 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0247
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018225.1chromosomeCM018225.1:6194049..6194111 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:6884639..6884701 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:59752871..59752933 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_11chromosomeKI_11:5376023..5376085 +Gossypioides kirkii genome ISU_v3n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:117502869..117502931 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:6177181..6177243 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:8692075..8692137 +Gossypium australe (G2) genome CRI_v1.1n/a
CM016624.1chromosomeCM016624.1:8564646..8564708 +Gossypium australe (G2) genome CRI_v1.1n/a
CM016624.1chromosomeCM016624.1:8506101..8506163 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr7chromosomeDt_chr7:4703450..4703512 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold4070.1supercontigscaffold4070.1:2603..2665 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr7chromosomeAt_chr7:4272198..4272260 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:6689950..6690012 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:6498501..6498563 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:6479529..6479591 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:7077504..7077566 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:6377014..6377076 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:6745321..6745383 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:6539231..6539293 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:6953977..6954039 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:6447180..6447242 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:7127887..7127949 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:6314612..6314674 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:6658199..6658261 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:6433402..6433464 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:6880177..6880239 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:6225669..6225731 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:7070872..7070934 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:6596649..6596711 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:6367928..6367990 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:6935096..6935158 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:6606707..6606769 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:7248071..7248133 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:7087188..7087250 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:6827080..6827142 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:57238111..57238173 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:6805690..6805752 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:6163954..6164016 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:5540865..5540927 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:5995148..5995210 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:6385161..6385223 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:5256989..5257051 +Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:4730855..4730917 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:5370524..5370586 +Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:7659721..7659783 +Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:6006525..6006587 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:178089892..178089954 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0247 ID=USDA_SNP0247; Name=USDA_SNP0247; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGATAGAATAGTCATAGCTGAACTGTT[A/G]GATATCAGAATAAGA
TAATCAAAGGCACTGTT