USDA_SNP0243, USDA_SNP0243 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0243
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018227.1chromosomeCM018227.1:52619951..52620013 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018214.1chromosomeCM018214.1:100380035..100380097 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:49982206..49982268 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_13chromosomeKI_13:37909150..37909212 +Gossypioides kirkii genome ISU_v3n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:113970784..113970846 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:53819752..53819814 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:148453226..148453288 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr13chromosomeAt_chr13:22299912..22299974 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr8chromosomeAt_chr8:75489910..75489972 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:52830267..52830329 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A13chromosomeA13:71444876..71444938 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:55844621..55844683 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:100094161..100094223 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:56816529..56816591 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:102439365..102439427 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:55991943..55992005 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:100579417..100579479 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:52696283..52696345 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A13chromosomeA13:99039647..99039709 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:52323481..52323543 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:101327109..101327171 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:53615725..53615787 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A13chromosomeA13:104715656..104715718 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:53390351..53390413 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017622.1chromosomeCM017622.1:102281428..102281490 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:56642861..56642923 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017648.1chromosomeCM017648.1:107188665..107188727 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:53283375..53283437 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017700.1chromosomeCM017700.1:102406972..102407034 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:57071913..57071975 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A13chromosomeA13:103302011..103302073 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:109138121..109138183 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:113817335..113817397 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:49973546..49973608 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:10000662..10000724 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:52981887..52981949 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:37612877..37612939 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:35932590..35932652 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:55843008..55843070 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:35033287..35033349 -Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:27304470..27304532 -Gossypium gossypioides (D6) genome ISU_v1n/a
E13chromosomeE13:105240283..105240345 +Gossypium stocksii (E1) genome NSF_v1n/a
F13chromosomeF13:88282922..88282984 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:10413555..10413617 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0243 ID=USDA_SNP0243; Name=USDA_SNP0243; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGAGTTTTTATACTACTTCAGACTTCTTTATC[C/T]ATGTGCTGAA
CGAGATCGAGCGCTCTG