USDA_SNP0242, USDA_SNP0242 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0242
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00056Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr11chromosomeChr11:62263588..62263588 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018224.1chromosomeCM018224.1:64587948..64588010 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018211.1chromosomeCM018211.1:109358403..109358465 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:430004..430066 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_10chromosomeKI_10:329535..329597 +Gossypioides kirkii genome ISU_v3n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:842443..842505 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:414334..414396 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:145415309..145415371 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold613.1supercontigscaffold613.1:510899..510961 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:62994400..62994462 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:100360073..100360135 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:67302579..67302641 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:114274983..114275045 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:66429078..66429140 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:114609270..114609332 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:65481354..65481416 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:114396358..114396420 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:63731177..63731239 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:108900825..108900887 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:65229980..65230042 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:109780958..109781020 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:66360191..66360253 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:111162658..111162720 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:65141483..65141545 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:110443076..110443138 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:67240258..67240320 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:118081464..118081526 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:65424718..65424780 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:112672905..112672967 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:67611283..67611345 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:117666948..117667010 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:117641383..117641445 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:127814924..127814986 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:123556709..123556771 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:61506335..61506397 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:853710..853772 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:63587378..63587440 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:52441914..52441975 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:43450240..43450302 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:65316821..65316883 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:49003325..49003387 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:35798195..35798256 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:48437754..48437816 -Gossypium lobatum (D7) genome ISU_v1n/a
F10chromosomeF10:94502498..94502560 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:2846977..2847039 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0242 ID=USDA_SNP0242; Name=USDA_SNP0242; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGAGTTTGTGGTCGGGAAATTGGCGATGGGTTCCGTTGATATTCAAA
G[A/G]CAAGCAGCTTA