USDA_SNP0235, USDA_SNP0235 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0235
dbSNP IDN/A
TypeSNP
SNP AllelesG/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018214.1chromosomeCM018214.1:86231080..86231142 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
tig00008156_CRI-A2_v1.0.a1chromosometig00008156_CRI-A2_v1.0.a1:11412..11474 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:21033839..21033901 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016614.1chromosomeCM016614.1:130814890..130814952 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr5chromosomeAt_chr5:52852897..52852959 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr9chromosomeAt_chr9:47321465..47321527 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr10chromosomeAt_chr10:33515645..33515707 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr1chromosomeAt_chr1:87932170..87932232 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold144962supercontigscaffold144962:105..167 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A09chromosomeA09:34465083..34465145 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A13chromosomeA13:58418713..58418775 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A09chromosomeGhir_A09:40796135..40796197 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:85557905..85557967 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
scaffold9826_objsupercontigscaffold9826_obj:2950..3012 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:42882990..42883052 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:88569571..88569633 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:42149731..42149793 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:86591144..86591206 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:39499803..39499865 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A13chromosomeA13:85286598..85286660 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A03chromosomeGbar_A03:66089687..66089748 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Scaffold2033supercontigScaffold2033:2482..2544 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:87472537..87472599 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A13chromosomeA13:90512878..90512940 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:87986109..87986171 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017648.1chromosomeCM017648.1:92773143..92773205 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017700.1chromosomeCM017700.1:88478150..88478212 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A09chromosomeA09:43104681..43104743 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A13chromosomeA13:88811374..88811436 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:93648616..93648678 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Contig00065chromosomeContig00065:294173..294235 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Contig00045chromosomeContig00045:171694..171756 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:52310911..52310973 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Sequence
>USDA_SNP0235 ID=USDA_SNP0235; Name=USDA_SNP0235; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGAGGATACCCAAAGGAGATCAGTTCAGTATGCCCATAAAAAT[G/T
]CAATTCACGATGATTA