USDA_SNP0222, USDA_SNP0222 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0222
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018225.1chromosomeCM018225.1:4397732..4397794 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:4879422..4879484 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:61523395..61523457 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:119517509..119517571 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:4361570..4361632 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:5943694..5943756 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr1chromosomeAt_chr1:85500178..85500240 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr7chromosomeDt_chr7:2859873..2859935 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:4762367..4762429 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:4511254..4511316 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:4671517..4671579 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:5048307..5048369 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:4608175..4608237 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:4824175..4824237 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:4718019..4718081 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:4930402..4930464 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:4618454..4618516 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:5082220..5082282 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:4483539..4483601 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:4676943..4677005 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:4502574..4502636 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:4913183..4913245 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:4433681..4433743 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:5061590..5061652 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:4533610..4533672 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:5030354..5030416 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:4523834..4523896 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:4935625..4935687 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:4743118..4743180 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:5145785..5145847 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:5019883..5019945 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:4811917..4811979 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:59008312..59008374 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:4837322..4837384 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:4299486..4299548 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:3973639..3973701 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:4074319..4074381 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:4483223..4483285 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:3756209..3756271 -Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:5392943..5393005 -Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:4173596..4173658 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>USDA_SNP0222 ID=USDA_SNP0222; Name=USDA_SNP0222; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGACTTATTGTGGATGGTTTGAC[C/T]ATTGTTTTGAGATGGGTTA
GCAACTTTTTGACTAAA