USDA_SNP0219, USDA_SNP0219 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0219
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018225.1chromosomeCM018225.1:5205311..5205373 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:5759015..5759077 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_11chromosomeKI_11:4596981..4597042 -Gossypioides kirkii genome ISU_v3n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:118657535..118657597 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:5118078..5118140 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:7086747..7086809 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr7chromosomeDt_chr7:3652134..3652196 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr7chromosomeAt_chr7:6638407..6638469 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold9301supercontigscaffold9301:2443..2505 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D11chromosomeD11:5665125..5665187 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:5466724..5466786 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:5933302..5933364 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:5389019..5389081 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:5668295..5668357 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:5514086..5514148 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:5811000..5811062 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:5418865..5418927 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:5991642..5991704 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:5291308..5291370 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:5533693..5533755 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:5313891..5313953 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:5758301..5758363 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:5243390..5243452 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:5940814..5940876 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:5452085..5452147 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:5926859..5926921 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:5305929..5305991 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:5790505..5790567 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:5557624..5557686 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:6032393..6032455 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:5911558..5911620 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:5672005..5672067 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:58252946..58253008 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr07chromosomeChr07:5096152..5096214 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr07chromosomeChr07:4296903..4296965 -Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:4003234..4003296 -Gossypium gossypioides (D6) genome ISU_v1n/a
E11chromosomeE11:6453845..6453907 -Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:4969107..4969169 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:180004198..180004260 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0219 ID=USDA_SNP0219; Name=USDA_SNP0219; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGACATGTTTTAAGTCT[A/G]CCATTATTTAAGTGTATGGTAACGT
GTGTTACATATATGTCC