USDA_SNP0213, USDA_SNP0213 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0213
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018210.1chromosomeCM018210.1:57424838..57424900 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:63883723..63883785 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016622.1chromosomeCM016622.1:26350818..26350880 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr6chromosomeAt_chr6:42967848..42967910 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A09chromosomeA09:56480637..56480699 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A09chromosomeGhir_A09:61408046..61408108 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A09chromosomeA09:63436506..63436568 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:63093822..63093884 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:60025811..60025873 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Scaffold96_ERROPOS106852supercontigScaffold96_ERROPOS106852:100208..100270 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A09chromosomeA09:59338576..59338638 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017618.1chromosomeCM017618.1:58988256..58988318 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017644.1chromosomeCM017644.1:61964748..61964810 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017696.1chromosomeCM017696.1:59250778..59250840 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A09chromosomeA09:64442102..64442164 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:63396042..63396104 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:66548589..66548651 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr09chromosomeChr09:34017886..34017947 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:50855135..50855197 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:34328797..34328859 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr06chromosomeChr06:25848788..25848850 +Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:19076479..19076541 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr06chromosomeChr06:23703315..23703377 +Gossypium lobatum (D7) genome ISU_v1n/a
E09chromosomeE09:22934808..22934870 -Gossypium stocksii (E1) genome NSF_v1n/a
F09chromosomeF09:52471163..52471225 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr09chromosomeChr09:106281002..106281064 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0213 ID=USDA_SNP0213; Name=USDA_SNP0213; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGAATTTCTTGCATCCCTTCCAAAACCCACA[C/T]GATTGCCCACT
TTGCTCTGGTTCTGGCA