USDA_SNP0211, USDA_SNP0211 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0211
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018226.1chromosomeCM018226.1:6525167..6525229 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018213.1chromosomeCM018213.1:8428536..8428598 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018213.1chromosomeCM018213.1:12368512..12368574 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:50947281..50947343 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:94270919..94270981 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:98011708..98011770 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016625.1chromosomeCM016625.1:24704399..24704461 +Gossypium australe (G2) genome CRI_v1.1n/a
CM016625.1chromosomeCM016625.1:31102181..31102243 -Gossypium australe (G2) genome CRI_v1.1n/a
CM016625.1chromosomeCM016625.1:25063417..25063479 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr8chromosomeDt_chr8:3608845..3608907 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr8chromosomeAt_chr8:40246468..40246530 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:6736019..6736081 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A12chromosomeA12:8556998..8557060 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:6685918..6685980 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:8642340..8642402 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:6532570..6532632 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:8282682..8282744 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:6690706..6690767 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:8640860..8640922 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:6649619..6649681 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A12chromosomeA12:8618999..8619061 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:6454808..6454870 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:8620717..8620779 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:12647315..12647377 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:6417621..6417683 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A12chromosomeA12:8412016..8412078 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A12chromosomeA12:12310940..12311002 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:6497855..6497917 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017621.1chromosomeCM017621.1:8412867..8412929 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017621.1chromosomeCM017621.1:12243255..12243317 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:6538084..6538146 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017647.1chromosomeCM017647.1:8924893..8924955 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017647.1chromosomeCM017647.1:12831029..12831091 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:6546417..6546479 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017699.1chromosomeCM017699.1:8350101..8350163 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017699.1chromosomeCM017699.1:12318661..12318723 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:6858340..6858402 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A12chromosomeA12:8669125..8669187 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:8989636..8989698 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:12987612..12987674 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:8831318..8831380 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:12672495..12672557 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:6458526..6458588 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:13445548..13445610 -Gossypium anomalum (B1) genome NSF_v1n/a
B_12chromosomeB_12:9765514..9765576 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr08chromosomeChr08:6552588..6552650 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:6175381..6175443 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:6086225..6086287 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:6621874..6621936 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:4231348..4231410 -Gossypium gossypioides (D6) genome ISU_v1n/a
E12chromosomeE12:14330084..14330146 -Gossypium stocksii (E1) genome NSF_v1n/a
F12chromosomeF12:11181413..11181475 -Gossypium longicalyx (F1) genome NSF_v1n/a
F12chromosomeF12:7516282..7516344 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr12chromosomeChr12:137385473..137385535 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0211 ID=USDA_SNP0211; Name=USDA_SNP0211; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGAATGGAAGAGCAGAAAACAAGGCAGCGTTTGCATCAACAGTGGG[
C/T]CTACTTCTCAGTT