USDA_SNP0210, USDA_SNP0210 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0210
dbSNP IDN/A
TypeSNP
SNP AllelesC/G
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018222.1chromosomeCM018222.1:4839511..4839572 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:5264365..5264427 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:4796144..4796205 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:5576376..5576437 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr4chromosomeDt_chr4:32250546..32250607 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr4chromosomeAt_chr4:84346213..84346274 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:5025977..5026038 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A08chromosomeA08:4822003..4822064 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold4313_D08supercontigscaffold4313_D08:9972..10033 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:5091763..5091824 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:5278142..5278203 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:4888274..4888335 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:5307272..5307333 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:5649616..5649677 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:5155050..5155111 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A08chromosomeA08:5232878..5232939 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D08chromosomeGbar_D08:4967908..4967969 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:5618255..5618317 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:5097966..5098027 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A08chromosomeA08:5400192..5400253 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:5091316..5091377 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017617.1chromosomeCM017617.1:5607173..5607234 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:5341998..5342059 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:5791906..5791967 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:5086014..5086075 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017695.1chromosomeCM017695.1:5437880..5437942 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:5231987..5232048 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A08chromosomeA08:5736725..5736786 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:5795566..5795627 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:6105275..6105336 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:4794643..4794704 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr04chromosomeChr04:4906253..4906314 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr04chromosomechr04:4395388..4395449 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_04chromosomeChr_04:4171736..4171797 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:4498286..4498347 +Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:4177744..4177805 +Gossypium lobatum (D7) genome ISU_v1n/a
E08chromosomeE08:7490840..7490901 +Gossypium stocksii (E1) genome NSF_v1n/a
Sequence
>USDA_SNP0210 ID=USDA_SNP0210; Name=USDA_SNP0210; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGAATGCCCTTGATGTATGCATGTCTGATGATAAACATTTTGCCGTC
CGAACATTTGTC[C/G]