USDA_SNP0207, USDA_SNP0207 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0207
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018226.1chromosomeCM018226.1:44090973..44091035 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018213.1chromosomeCM018213.1:79367747..79367808 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_12chromosomeD10_12:39058643..39058707 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016625.1chromosomeCM016625.1:62473268..62473330 +Gossypium australe (G2) genome CRI_v1.1n/a
CM016625.1chromosomeCM016625.1:112059492..112059554 +Gossypium australe (G2) genome CRI_v1.1n/a
CM016623.1chromosomeCM016623.1:18327647..18327709 -Gossypium australe (G2) genome CRI_v1.1n/a
CM016615.1chromosomeCM016615.1:92124940..92125002 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr8chromosomeDt_chr8:40845884..40845946 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:43560766..43560828 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:46586198..46586260 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:45665976..45666038 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:46559776..46559838 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:44413376..44413438 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:43378837..43378899 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:44595710..44595772 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A12chromosomeA12:81307520..81307581 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:44564227..44564289 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017621.1chromosomeCM017621.1:82840812..82840873 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:47075236..47075298 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:45188655..45188717 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017699.1chromosomeCM017699.1:81733373..81733434 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:46554234..46554296 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:88487854..88487915 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
chr08chromosomechr08:32772759..32772821 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:30317080..30317144 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:43671886..43671948 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:29919205..29919265 +Gossypium aridum (D4) genome ISU_v1n/a
E12chromosomeE12:92133090..92133151 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr12chromosomeChr12:21773736..21773796 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0207 ID=USDA_SNP0207; Name=USDA_SNP0207; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGAATCTTTCAAATACATAAAAAAACTCCTTAGAAAAAAATCCAACA
TATC[C/T]ATACCTGA