USDA_SNP0204, USDA_SNP0204 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0204
dbSNP IDN/A
TypeSNP
SNP AllelesG/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018226.1chromosomeCM018226.1:56828485..56828547 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:2876879..2876941 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_12chromosomeD10_12:51830371..51830433 +Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold1841.1supercontigscaffold1841.1:7740..7802 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:56842983..56843045 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:59509424..59509486 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:58708407..58708469 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:59558627..59558689 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:57636781..57636843 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:56034848..56034910 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:57814258..57814320 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:57669490..57669552 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:60666637..60666699 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:58237941..58238003 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:60055258..60055320 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:54858689..54858751 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr08chromosomeChr08:55260076..55260138 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:43008951..43009013 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:40807934..40807996 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:56818316..56818378 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:39888826..39888888 +Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:38260150..38260212 +Gossypium lobatum (D7) genome ISU_v1n/a
Sequence
>USDA_SNP0204 ID=USDA_SNP0204; Name=USDA_SNP0204; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGAATATCAAAGATTAAACGGTTG[G/T]TAGACGAGCTAGAAGCCA
ACTGAGGACCAGGTAGT