USDA_SNP0201, USDA_SNP0201 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0201
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018222.1chromosomeCM018222.1:12224738..12224800 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:15087213..15087275 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:11806331..11806393 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_08chromosomeKI_08:7395661..7395723 +Gossypioides kirkii genome ISU_v3n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:16912561..16912623 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_08chromosomeD10_08:50403755..50403817 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016621.1chromosomeCM016621.1:122447562..122447624 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr4chromosomeDt_chr4:21962939..21963001 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr4chromosomeAt_chr4:89921918..89921980 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:12168315..12168377 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A08chromosomeA08:14952597..14952659 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:12135271..12135333 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:15661473..15661535 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:11771321..11771383 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:15275143..15275205 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:11632710..11632772 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:15644671..15644733 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:12271703..12271765 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A08chromosomeA08:15440259..15440321 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D08chromosomeGbar_D08:12343557..12343619 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:15460293..15460355 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:12426022..12426084 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A08chromosomeA08:15111678..15111740 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:12389539..12389601 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017617.1chromosomeCM017617.1:15520151..15520213 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:12875685..12875747 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:16139752..16139814 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:12256022..12256084 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017695.1chromosomeCM017695.1:15289287..15289349 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:12344485..12344547 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A08chromosomeA08:16132793..16132855 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:16636035..16636097 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:16621295..16621357 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:11641067..11641129 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:16745238..16745300 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:12120760..12120822 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr04chromosomechr04:10523761..10523823 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_04chromosomeChr_04:9412527..9412589 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:12070012..12070074 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:9287692..9287754 +Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:7778368..7778430 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr04chromosomeChr04:9147272..9147334 +Gossypium lobatum (D7) genome ISU_v1n/a
E08chromosomeE08:20640095..20640157 +Gossypium stocksii (E1) genome NSF_v1n/a
F08chromosomeF08:14184624..14184686 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr08chromosomeChr08:167601806..167601868 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0201 ID=USDA_SNP0201; Name=USDA_SNP0201; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGAAGTAAAAATCAACGACCTTTGGAGCGTTGG[C/T]GCTGGTGAG
AGTAGCAAAGAGGTTCA