USDA_SNP0200, USDA_SNP0200 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0200
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018209.1chromosomeCM018209.1:1367257..1367319 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:1666670..1666732 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold72.1supercontigscaffold72.1:37832..37894 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold2269_A08supercontigscaffold2269_A08:23053..23115 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A08chromosomeGhir_A08:1667588..1667650 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:1490163..1490225 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:1674371..1674433 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:1270191..1270253 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A08chromosomeGbar_A08:1611487..1611549 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:1498578..1498640 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017617.1chromosomeCM017617.1:1499239..1499301 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017643.1chromosomeCM017643.1:1586151..1586213 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:1554133..1554195 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:1688982..1689044 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:1526973..1527035 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:1656973..1657035 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_08chromosomeB_08:1646390..1646452 +Gossypium anomalum (B1) genome NSF_v1n/a
F08chromosomeF08:1229608..1229670 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>USDA_SNP0200 ID=USDA_SNP0200; Name=USDA_SNP0200; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGA[A/T]GCTACTAGGTTCCCCATTAGAGAGTCCAAAGACGGTTCC
TATCCATGTCTTTCGAG