USDA_SNP0199, USDA_SNP0199 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0199
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018211.1chromosomeCM018211.1:75564014..75564076 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018224.1chromosomeCM018224.1:20138684..20138746 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:95180853..95180915 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_12chromosomeD10_12:36347041..36347103 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D10_10chromosomeD10_10:44312117..44312179 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr11chromosomeDt_chr11:19451771..19451833 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr7chromosomeAt_chr7:17971822..17971884 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr11chromosomeAt_chr11:28655102..28655164 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold8357supercontigscaffold8357:1029..1091 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold2685_A10supercontigscaffold2685_A10:22135..22197 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:79621299..79621361 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D10chromosomeGhir_D10:20494417..20494479 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:81133606..81133668 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:19949267..19949329 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:79658529..79658591 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:20648483..20648545 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:74895163..74895225 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D10chromosomeD10:20601624..20601686 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A10chromosomeGbar_A10:75871261..75871323 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D10chromosomeGbar_D10:19962930..19962992 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:77460543..77460605 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:76683024..76683086 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:83457127..83457189 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017658.1chromosomeCM017658.1:20619988..20620050 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:78681316..78681378 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017710.1chromosomeCM017710.1:20480481..20480543 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:82630664..82630726 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D10chromosomeD10:20744424..20744486 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:45483511..45483573 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:33586954..33587016 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
chr11chromosomechr11:17561956..17562018 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:14582438..14582500 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Sequence
>USDA_SNP0199 ID=USDA_SNP0199; Name=USDA_SNP0199; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGAAGCATATGCATTTCTCTAAGGGGTTGTCTTTGCATAAGAAATG[
A/G]GATTTAGCGAAAT