USDA_SNP0196, USDA_SNP0196 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0196
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018219.1chromosomeCM018219.1:51676039..51676101 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018205.1chromosomeCM018205.1:11406818..11406880 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:46482559..46482621 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_05chromosomeD10_05:12020708..12020770 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016618.1chromosomeCM016618.1:15968649..15968711 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:28582402..28582464 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:50901210..50901272 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A04chromosomeA04:11093424..11093486 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A04chromosomeGhir_A04:12524436..12524498 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:52928362..52928424 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:11815951..11816013 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:53637626..53637688 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:11116752..11116814 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:52291503..52291565 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A04chromosomeA04:10883941..10884003 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:51751529..51751591 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A04chromosomeGbar_A04:11459849..11459911 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:53609332..53609394 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A04chromosomeA04:11135797..11135859 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:52454070..52454132 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017613.1chromosomeCM017613.1:12131155..12131217 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:53829054..53829116 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017639.1chromosomeCM017639.1:13098314..13098376 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:52750476..52750538 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017691.1chromosomeCM017691.1:11212980..11213042 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:54528659..54528721 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A04chromosomeA04:12596186..12596248 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:80110786..80110848 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:47809520..47809582 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:48235776..48235838 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:38660281..38660343 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:37523999..37524061 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr_09chromosomeChr_09:37523755..37523817 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:51045569..51045631 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:34715973..34716035 +Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:36236530..36236592 +Gossypium lobatum (D7) genome ISU_v1n/a
F05chromosomeF05:65853589..65853651 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>USDA_SNP0196 ID=USDA_SNP0196; Name=USDA_SNP0196; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGAACGGAAGCCTGGTGTCGGAGGAAAAAAC[C/T]GAAAAGGCGCT
TGAAATTGTTTCAGAAA