USDA_SNP0193, USDA_SNP0193 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0193
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018215.1chromosomeCM018215.1:2624343..2624405 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018202.1chromosomeCM018202.1:2756165..2756227 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:2588378..2588440 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:2778893..2778955 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_01chromosomeD10_01:58010474..58010536 +Gossypium turneri (D10) genome NSF_v1_a2n/a
D01chromosomeD01:2226611..2226673 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:2482584..2482646 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:2737829..2737891 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:3036112..3036174 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:2599854..2599916 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:2906578..2906640 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:2732799..2732861 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:3038766..3038828 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:2539271..2539333 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D01chromosomeD01:2607076..2607138 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A01chromosomeA01:2990912..2990974 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D01chromosomeGbar_D01:2892152..2892214 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:2745603..2745665 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:2925129..2925191 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A01chromosomeA01:2744766..2744828 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:2803395..2803457 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017610.1chromosomeCM017610.1:3271946..3272008 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:2641824..2641886 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:2796163..2796225 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:2930414..2930476 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017688.1chromosomeCM017688.1:2755911..2755973 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:2736434..2736496 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A01chromosomeA01:3036403..3036465 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:2765764..2765826 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:2699098..2699160 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:2563778..2563840 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_01chromosomeB_01:2846547..2846609 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:2686316..2686378 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:2516273..2516335 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:2641449..2641511 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:2931463..2931525 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:2491210..2491272 -Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:2041760..2041822 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr02chromosomeChr02:2525015..2525077 -Gossypium lobatum (D7) genome ISU_v1n/a
F01chromosomeF01:2595944..2596006 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr01chromosomeChr01:196614853..196614915 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0193 ID=USDA_SNP0193; Name=USDA_SNP0193; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGAAATTGTAATAACTA[C/T]TATGCCCGCAATTACTGTTGTAATA
ACAATGACCTTTCTACT