USDA_SNP0192, USDA_SNP0192 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0192
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:13114759..13114821 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:14619332..14619394 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016614.1chromosomeCM016614.1:18229224..18229286 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr2chromosomeAt_chr2:13126673..13126735 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:13250322..13250384 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:13810130..13810192 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:13351209..13351271 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:13708263..13708325 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:13574353..13574415 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:13260100..13260162 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:13249862..13249924 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:14450755..14450817 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:13650288..13650350 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:13324510..13324572 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:13717367..13717429 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:13404828..13404890 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:14487872..14487934 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr02chromosomeChr02:11440393..11440455 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:10105499..10105561 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr02chromosomeChr02:11365601..11365663 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
E01chromosomeE01:16451415..16451477 -Gossypium stocksii (E1) genome NSF_v1n/a
F01chromosomeF01:11767978..11768040 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>USDA_SNP0192 ID=USDA_SNP0192; Name=USDA_SNP0192; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGAAATGATTTTATATAATTCTTCAGATATTGCTTTTGCACCATATG
G[A/G]GGCTATTGGAG