USDA_SNP0190, USDA_SNP0190 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0190
dbSNP IDN/A
TypeSNP
SNP AllelesG/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018223.1chromosomeCM018223.1:42375070..42375132 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018210.1chromosomeCM018210.1:68471142..68471204 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:35984261..35984323 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_09chromosomeKI_09:32299192..32299254 +Gossypioides kirkii genome ISU_v3n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:75672887..75672949 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_09chromosomeD10_09:7623241..7623303 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016622.1chromosomeCM016622.1:11670860..11670922 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr6chromosomeAt_chr6:55343855..55343917 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr6chromosomeDt_chr6:7948700..7948762 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:42430146..42430208 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A09chromosomeA09:67993381..67993443 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:44487168..44487230 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:72751927..72751988 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:43990676..43990738 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:74365628..74365690 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:44239191..44239253 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:74521410..74521472 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:42325091..42325153 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A09chromosomeA09:71148181..71148243 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D09chromosomeGbar_D09:43080592..43080654 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:68926197..68926259 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:45559707..45559769 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A09chromosomeA09:70411656..70411718 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:43304707..43304769 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017618.1chromosomeCM017618.1:70308792..70308854 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:44692996..44693058 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017644.1chromosomeCM017644.1:73236288..73236350 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:43895134..43895196 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017696.1chromosomeCM017696.1:70441046..70441108 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:45938825..45938887 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A09chromosomeA09:75988801..75988863 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:75046307..75046369 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:77966049..77966111 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr09chromosomeChr09:42197748..42197810 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr_06chromosomeChr_06:29507061..29507123 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:44041591..44041653 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:32520416..32520478 +Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:24465306..24465367 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr06chromosomeChr06:30044306..30044368 +Gossypium lobatum (D7) genome ISU_v1n/a
E09chromosomeE09:10463019..10463081 -Gossypium stocksii (E1) genome NSF_v1n/a
Sequence
>USDA_SNP0190 ID=USDA_SNP0190; Name=USDA_SNP0190; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGAAATATGTTTCAGATCTCGTTAAAGAGGTGCTAGTAATACTC[G/
T]TTTTACAAAGGAAAA