USDA_SNP0187, USDA_SNP0187 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0187
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018218.1chromosomeCM018218.1:9069802..9069864 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:91495517..91495579 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:41934411..41934473 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:86356906..86356968 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_04chromosomeD10_04:9162102..9162164 +Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr9chromosomeAt_chr9:65767817..65767879 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold71.1supercontigscaffold71.1:1564290..1564352 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:9025029..9025091 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:80296940..80297002 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:9665935..9665997 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:97638997..97639059 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:9441296..9441358 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:99095792..99095854 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:9565614..9565676 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:97614552..97614614 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:8982233..8982295 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:95643307..95643369 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D04chromosomeGbar_D04:9139138..9139200 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:91481383..91481445 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:9107797..9107859 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:96533588..96533650 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:9219540..9219602 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:93373087..93373149 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:9497855..9497917 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:101918799..101918861 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:9149088..9149150 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:94338102..94338164 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:10044693..10044755 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:99163739..99163801 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:12185453..12185515 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:12092297..12092359 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr04chromosomeChr04:41682879..41682941 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
chr12chromosomechr12:8349198..8349260 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_12chromosomeChr_12:6456477..6456539 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr12chromosomeChr12:6032261..6032323 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr12chromosomeChr12:7986303..7986365 +Gossypium lobatum (D7) genome ISU_v1n/a
E04chromosomeE04:15346765..15346827 +Gossypium stocksii (E1) genome NSF_v1n/a
F04chromosomeF04:10398673..10398735 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr04chromosomeChr04:18650016..18650078 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0187 ID=USDA_SNP0187; Name=USDA_SNP0187; organism=Gossypium hirsutum; type=genetic_marker; length=68bp
TGCAGAAACCAATCCTGTTTCAGAACAGACAGAACATTTAGTCAAGTTTA
AGAAATAAACATC[A/T]