USDA_SNP0180, USDA_SNP0180 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0180
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018212.1chromosomeCM018212.1:59586711..59586773 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018225.1chromosomeCM018225.1:26376548..26376610 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:39954575..39954637 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_11chromosomeKI_11:17341781..17341843 -Gossypioides kirkii genome ISU_v3n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:85520525..85520587 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:26107694..26107756 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:56698582..56698644 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr1chromosomeAt_chr1:85779975..85780037 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr7chromosomeDt_chr7:27678286..27678348 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A11chromosomeA11:55565067..55565129 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold198804supercontigscaffold198804:120..182 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D11chromosomeD11:26555571..26555633 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:64640245..64640307 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D11chromosomeGhir_D11:27184495..27184557 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:62319846..62319908 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:26536894..26536956 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:62828446..62828508 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:27278384..27278446 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:61116838..61116900 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D11chromosomeD11:27013923..27013985 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A11chromosomeGbar_A11:59366952..59367014 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D11chromosomeGbar_D11:26685519..26685581 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:59958286..59958348 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D11chromosomeD11:26539085..26539147 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:62693541..62693603 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017633.1chromosomeCM017633.1:26591193..26591255 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:65550882..65550944 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017659.1chromosomeCM017659.1:27020961..27021023 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:60110261..60110323 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017711.1chromosomeCM017711.1:26556086..26556148 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:64410145..64410207 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D11chromosomeD11:27594377..27594439 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:37845342..37845404 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:37387133..37387195 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:37817731..37817793 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:33902783..33902845 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:26909427..26909489 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:22066965..22067027 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:21959006..21959068 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:26785001..26785063 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:17159412..17159474 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:20467386..20467448 -Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:38353876..38353938 -Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:30430148..30430210 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:117891467..117891529 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0180 ID=USDA_SNP0180; Name=USDA_SNP0180; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGTTGGATTGTTCG[C/T]AGCAGCTGGTTGCATGTATGTTTTGAAG
CGGTTGGGAAAGCAACC