USDA_SNP0179, USDA_SNP0179 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0179
dbSNP IDN/A
TypeSNP
SNP AllelesC/G
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018225.1chromosomeCM018225.1:61355074..61355110 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018225.1chromosomeCM018225.1:61346040..61346076 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:106268237..106268273 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_11chromosomeD10_11:60835852..60835888 -Gossypium turneri (D10) genome NSF_v1_a2n/a
A11chromosomeA11:84855703..84855739 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D11chromosomeD11:63232400..63232436 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:63991664..63991700 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:63982642..63982678 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:61358144..61358180 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:60845379..60845415 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:104726817..104726853 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
CM017659.1chromosomeCM017659.1:65081323..65081358 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:116908483..116908519 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:60757158..60757194 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:63920704..63920740 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:120946936..120946972 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
B_11chromosomeB_11:91520451..91520487 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:61518148..61518184 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr07chromosomeChr07:61023083..61023119 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:44194884..44194920 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr07chromosomeChr07:38000148..38000184 +Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:40881692..40881728 +Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:103555395..103555431 +Gossypium stocksii (E1) genome NSF_v1n/a
Sequence
>USDA_SNP0179 ID=USDA_SNP0179; Name=USDA_SNP0179; organism=Gossypium hirsutum; type=genetic_marker; length=41bp
TGCAGTTGCTCAAAACAGTTT[C/G]ATTTTATCTTCTGCC