USDA_SNP0177, USDA_SNP0177 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0177
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018223.1chromosomeCM018223.1:49422256..49422318 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:42596382..42596444 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
scaffold104.1supercontigscaffold104.1:1912163..1912225 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:49819724..49819786 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:51615240..51615302 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:50860153..50860215 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:51382952..51383014 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:49464786..49464848 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D09chromosomeGbar_D09:50275033..50275095 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:52633711..52633773 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:50388425..50388487 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:51898536..51898598 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:51086249..51086311 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:53272198..53272260 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:48833332..48833393 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr_06chromosomeChr_06:34939662..34939723 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:50775959..50776020 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:36017383..36017444 -Gossypium lobatum (D7) genome ISU_v1n/a
E09chromosomeE09:1508634..1508694 +Gossypium stocksii (E1) genome NSF_v1n/a
Sequence
>USDA_SNP0177 ID=USDA_SNP0177; Name=USDA_SNP0177; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGTTGACTTAAAACATTAAATTTTGTGATTAATTACCCTTAATTG[C
/T]TCACTTTCGAAATC