USDA_SNP0176, USDA_SNP0176 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0176
dbSNP IDN/A
TypeSNP
SNP AllelesA/C
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018223.1chromosomeCM018223.1:50201260..50201322 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:43289102..43289164 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_09chromosomeD10_09:595353..595415 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Ghir_D09chromosomeGhir_D09:52346994..52347056 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Gbar_D09chromosomeGbar_D09:51048358..51048420 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:53347488..53347550 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:51107994..51108056 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:52716221..52716283 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:51685672..51685734 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
Chr09chromosomeChr09:49524967..49525029 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:70093359..70093422 +Gossypium anomalum (B1) genome NSF_v1n/a
chr06chromosomechr06:42210888..42210950 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr06chromosomeChr06:51487925..51487987 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:29953624..29953686 +Gossypium gossypioides (D6) genome ISU_v1n/a
E09chromosomeE09:713688..713751 -Gossypium stocksii (E1) genome NSF_v1n/a
Chr09chromosomeChr09:131789072..131789135 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0176 ID=USDA_SNP0176; Name=USDA_SNP0176; organism=Gossypium hirsutum; type=genetic_marker; length=68bp
TGCAGTTCTTAATCTTGTCCATGAAATTATTAAGCTTTCATGCAAAAATT
CAAAAAAAAAAAA[A/C]