USDA_SNP0161, USDA_SNP0161 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0161
dbSNP IDN/A
TypeSNP
SNP AllelesG/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018221.1chromosomeCM018221.1:8847881..8847943 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018208.1chromosomeCM018208.1:10631984..10632046 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:8865648..8865710 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:10838561..10838623 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_07chromosomeD10_07:45153693..45153755 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016620.1chromosomeCM016620.1:102313159..102313220 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr12chromosomeDt_chr12:18728068..18728130 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr1chromosomeDt_chr1:44939304..44939366 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:8964198..8964260 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A07chromosomeA07:9633622..9633684 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:9222595..9222657 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:10598711..10598773 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:8824597..8824659 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:10060771..10060833 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:9160071..9160133 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:10564350..10564412 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:9049556..9049618 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A07chromosomeA07:10635871..10635933 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:9213986..9214048 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:10640643..10640705 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:8997275..8997337 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A07chromosomeA07:10422549..10422611 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:9309992..9310054 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017616.1chromosomeCM017616.1:10459763..10459825 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:9320623..9320685 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017642.1chromosomeCM017642.1:10666066..10666128 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:9147808..9147870 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017694.1chromosomeCM017694.1:10540021..10540083 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:9303451..9303513 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A07chromosomeA07:10663972..10664034 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:10944175..10944237 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:10912182..10912244 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr07chromosomeChr07:44715990..44716052 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_07chromosomeB_07:10758930..10758992 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr01chromosomeChr01:9028413..9028475 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:8195718..8195780 +Gossypium armourianum (D2-1) genome ISU_v1n/a
chr01chromosomechr01:8192869..8192931 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:8276126..8276188 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:8910544..8910606 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:7426109..7426171 +Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:6182093..6182155 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:7622935..7622997 +Gossypium lobatum (D7) genome ISU_v1n/a
E07chromosomeE07:80855627..80855689 -Gossypium stocksii (E1) genome NSF_v1n/a
F07chromosomeF07:9873857..9873919 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr07chromosomeChr07:16350193..16350255 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0161 ID=USDA_SNP0161; Name=USDA_SNP0161; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGTTAACCTCTGGTCAAGGGCATT[G/T]AAAAAGATCACAAGTACA
GCATCTCTAATCGATTT